Links

UW-Madison:

Lindroth Lab UW-Madison

Wisconsin Ecology

UW Zoology

UW Entomology

 

Collaborators:

Dr. Richard Barker (Botany Dept. UW-Madison)

Dr. Liza Holeski (Dept. of Biological Sciences, Northern Arizona University)

Dr. Glen Stanosz (Forest and Wildlife Ecology Dept. UW-Madison)

Dr. Pär Ingvarsson (Dept. of Ecology and Environmental Science, Umeå University) 

 

Women in STEM:

Earth Science Women’s Network

Graduate Women in Science

Women in Science and Engineering Leadership Institute

Tenure, She Wrote Blog

 

Advice:

Dr. Philip Guo’s (Dept. of Computer Science at Rochester University) writings (topics include: advice for new grad students, how to be effective, tips for writing emails, and more)

Dr. Spencer Hall’s (Dept. of Biolocy at Indiana University) advice for grad students and post docs

The Professor is in Blog

Future of Research Blog

 

TED Talks:

Amy Cuddy: “Your body language shapes who you are”

Ken Robinson’s picks for the top ten Education TED Talks

7 TED Talks to make you love science!

11 Awesome TED Talks about insects!

Kickstart your creativity TED Talk playlist

Work Smarter TED Talk playlist

What is success? TED Talk playlist

 

Good Reads:

Writing Science by Josh Shimel

Made to Stick by Chip Heath and Dan Heath

Outliers by Malcolm Gladwell

How Learning Works by Ambrose, Bridges, DiPietro, Lovett, + Norman

 

Bioinformatic Tools:

Phenotyping

Plant Image Analysis Programs

Computing

CyVerse

Open Science Grid

Exploring Genetic Data

KNetMiner (like a google search engine for genes and their corresponding information, e.g., publications, proteins, function, etc.)

String (protein-protein interactions)

Genemania (gene co-expression networks for Arabidopsis)

Thalemine (Arabidopsis-specific)

ePlant (gene expression patterns)

Populus Genome Integrative Explorer (PopGenIE) 

Integrative Genome Viewer

Genome-wide Association Mapping 

PLINK

GEMMA – Genome-wide Efficient Mixed Model Association

BimBam

Multi-trait Association Mapping with mVLMM

Multi-trait GWAS Resources

SNP filtering

Vcftools and Bcftools

Genome Analysis Toolkit (GATK)

Population structure and analysis

Admixture

STRUCTURE

EIGENSOFT

SNPRelate

Adegenet

 

Insect Identification and Resources

Insecta

BugGuide

Global Biodiversity Information Facility

Insects on Willows

Insects on Aspen

WisAsp Insect Guide

Ant Texts

 

Data Visualization

Shiny from R Studio (Shiny Graph Catalog)

D3 interactive graphics

Qlik 

Visualizing.org

GENE-E (gene expression matrix visualization)

 

“A clear and innocent conscious fears nothing.” — Queen Elizabeth I

 

 

Advertisements